Human SNP ID | rs12596210 |
---|---|
Human chromosome | chr16 |
Human SNP position | 53994059 |
Pig chromosome | chr6 |
Pig SNP position | 28346032 |
PubMed ID | 22675492 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/22675492 |
Study | Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women. |
Disease/Trait | Sex hormone-binding globulin levels |
Initial sample | 1,598 European ancestry female individuals |
Replication sample | NA |
Region | 16q12.2 |
Chromosome id | chr16 |
Chromosome position | 53994059 |
Reported gene | FTO |
Mapped gene | FTO |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 79068 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12596210-C |
SNPs | rs12596210 |
Merged | 0 |
SNP id current | 12596210 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.12 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 0.12 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | sex hormone globulin binding measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004696 |
Study accession | GCST001554 |