SNP Detail For rs12596210
1.Mapping Information
Human SNP ID rs12596210
Human chromosome chr16
Human SNP position 53994059
Pig chromosome chr6
Pig SNP position 28346032
2.Annotation Information
PubMed ID22675492
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22675492
StudyGenome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.
Disease/TraitSex hormone-binding globulin levels
Initial sample1,598 European ancestry female individuals
Replication sampleNA
Region16q12.2
Chromosome idchr16
Chromosome position53994059
Reported geneFTO
Mapped geneFTO
Upstream gene id
Downstream gene id
SNP gene ids79068
Upstream gene distance
Downstream gene distance
SNP risk allelers12596210-C
SNPsrs12596210
Merged0
SNP id current12596210
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.12
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta0.12
%95 Ci[NR] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitsex hormone globulin binding measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004696
Study accessionGCST001554