SNP Detail For rs12582659
1.Mapping Information
Human SNP ID rs12582659
Human chromosome chr12
Human SNP position 75670748
Pig chromosome chr5
Pig SNP position 42527068
2.Annotation Information
PubMed ID23720494
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23720494
StudyGenome-wide association study identifies loci affecting blood copper, selenium and zinc.
Disease/TraitBlood trace element (Cu levels)
Initial sample2,603 European ancestry individuals
Replication sampleNA
Region12q21.2
Chromosome idchr12
Chromosome position75670748
Reported geneKRR1, PHLDA1
Mapped geneLOC105369844
Upstream gene id
Downstream gene id
SNP gene ids105369844
Upstream gene distance
Downstream gene distance
SNP risk allelers12582659-?
SNPsrs12582659
Merged0
SNP id current12582659
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.262
%95 Ci[0.73-1.79] unit increase
PlatformIllumina [> 2500000] (imputed)
CNVN
Mapped traitserum copper measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005267
Study accessionGCST002041