SNP Detail For rs12579720
1.Mapping Information
Human SNP ID rs12579720
Human chromosome chr12
Human SNP position 20020830
Pig chromosome chr5
Pig SNP position 56330638
2.Annotation Information
PubMed ID26390057
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26390057
StudyTrans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.
Disease/TraitDiastolic blood pressure
Initial sample31,516 East Asian ancestry individuals, 35,352 European ancestry individuals, 33,126 South Asian ancestry individuals
Replication sample87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals
Region12p12.2
Chromosome idchr12
Chromosome position20020830
Reported genePDE3A
Mapped geneLOC100506393
Upstream gene id
Downstream gene id
SNP gene ids100506393
Upstream gene distance
Downstream gene distance
SNP risk allelers12579720-C
SNPsrs12579720
Merged0
SNP id current12579720
Contextintron_variant
Intergenic0
Allele frequency0.316614178
P value0.0000000000000002
Pvalue mlog15.698970004336
P value text
Or beta0.3193904
%95 Ci[0.24-0.4] mmHg decrease
PlatformAffymetrix, Illumina, Perlegen [~ 2100000] (imputed)
CNVN
Mapped traitdiastolic blood pressure
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006336
Study accessionGCST003273