SNP Detail For rs12576775
1.Mapping Information
Human SNP ID rs12576775
Human chromosome chr11
Human SNP position 79366149
Pig chromosome chr9
Pig SNP position 15077077
2.Annotation Information
PubMed ID21926972
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21926972
StudyLarge-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.
Disease/TraitBipolar disorder
Initial sample7,481 European ancestry cases, 9,250 European ancestry controls
Replication sample4,496 European ancestry cases, 42,422 European ancestry controls
Region11q14.1
Chromosome idchr11
Chromosome position79366149
Reported geneODZ4
Mapped geneTENM4
Upstream gene id
Downstream gene id
SNP gene ids26011
Upstream gene distance
Downstream gene distance
SNP risk allelers12576775-G
SNPsrs12576775
Merged0
SNP id current12576775
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.14
%95 Ci[NR]
PlatformAffymetrix, Illumina [2415422] (imputed)
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001241
PubMed ID23453885
JournalLancet
Linkwww.ncbi.nlm.nih.gov/pubmed/23453885
StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
Disease/TraitAutism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)
Initial sample6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder tr
Replication sampleNA
Region11q14.1
Chromosome idchr11
Chromosome position79366149
Reported geneODZ4
Mapped geneTENM4
Upstream gene id
Downstream gene id
SNP gene ids26011
Upstream gene distance
Downstream gene distance
SNP risk allelers12576775-?
SNPsrs12576775
Merged0
SNP id current12576775
Contextintron_variant
Intergenic0
Allele frequency0.175
P value0.00000004
Pvalue mlog7.39794000867203
P value text(Modelling analysis)
Or beta
%95 Ci
PlatformNR [1252901] (imputed)
CNVN
Mapped traitattention deficit hyperactivity disorder, unipolar depression, schizophrenia, autism spectrum disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003888, http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0003756, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001877