Human SNP ID | rs12565776 |
---|---|
Human chromosome | chr1 |
Human SNP position | 183147396 |
Pig chromosome | chr9 |
Pig SNP position | 136543905 |
PubMed ID | 24871463 |
---|---|
Journal | Genes Immun |
Link | www.ncbi.nlm.nih.gov/pubmed/24871463 |
Study | GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 725 European ancestry cases, 2,438 European ancestry controls |
Replication sample | NA |
Region | 1q25.3 |
Chromosome id | chr1 |
Chromosome position | 183147396 |
Reported gene | LAMC1 |
Mapped gene | LAMC1 - LAMC2 |
Upstream gene id | 3915 |
Downstream gene id | 3918 |
SNP gene ids | |
Upstream gene distance | 1804 |
Downstream gene distance | 38643 |
SNP risk allele | rs12565776 |
SNPs | rs12565776 |
Merged | 0 |
SNP id current | 12565776 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002463 |