SNP Detail For rs12565776
1.Mapping Information
Human SNP ID rs12565776
Human chromosome chr1
Human SNP position 183147396
Pig chromosome chr9
Pig SNP position 136543905
2.Annotation Information
PubMed ID24871463
JournalGenes Immun
Linkwww.ncbi.nlm.nih.gov/pubmed/24871463
StudyGWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.
Disease/TraitSystemic lupus erythematosus
Initial sample725 European ancestry cases, 2,438 European ancestry controls
Replication sampleNA
Region1q25.3
Chromosome idchr1
Chromosome position183147396
Reported geneLAMC1
Mapped geneLAMC1 - LAMC2
Upstream gene id3915
Downstream gene id3918
SNP gene ids
Upstream gene distance1804
Downstream gene distance38643
SNP risk allelers12565776
SNPsrs12565776
Merged0
SNP id current12565776
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST002463