SNP Detail For rs12565140
1.Mapping Information
Human SNP ID rs12565140
Human chromosome chr1
Human SNP position 33463157
Pig chromosome chr6
Pig SNP position 83862935
2.Annotation Information
PubMed ID23518928
JournalMol Endocrinol
Linkwww.ncbi.nlm.nih.gov/pubmed/23518928
StudyTSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.
Disease/TraitEstradiol plasma levels (breast cancer)
Initial sample700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases
Replication sampleNA
Region1p35.1
Chromosome idchr1
Chromosome position33463157
Reported geneNR
Mapped genePHC2 - ZSCAN20
Upstream gene id1912
Downstream gene id7579
SNP gene ids
Upstream gene distance32547
Downstream gene distance9474
SNP risk allelers12565140-?
SNPsrs12565140
Merged0
SNP id current12565140
Contextupstream_gene_variant
Intergenic1
Allele frequency0.136
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta1.425
%95 Ci[1.247-1.629] unit increase
PlatformIllumina [563945]
CNVN
Mapped traitestradiol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004697
Study accessionGCST001914