Human SNP ID | rs12565140 |
---|---|
Human chromosome | chr1 |
Human SNP position | 33463157 |
Pig chromosome | chr6 |
Pig SNP position | 83862935 |
PubMed ID | 23518928 |
---|---|
Journal | Mol Endocrinol |
Link | www.ncbi.nlm.nih.gov/pubmed/23518928 |
Study | TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression. |
Disease/Trait | Estradiol plasma levels (breast cancer) |
Initial sample | 700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases |
Replication sample | NA |
Region | 1p35.1 |
Chromosome id | chr1 |
Chromosome position | 33463157 |
Reported gene | NR |
Mapped gene | PHC2 - ZSCAN20 |
Upstream gene id | 1912 |
Downstream gene id | 7579 |
SNP gene ids | |
Upstream gene distance | 32547 |
Downstream gene distance | 9474 |
SNP risk allele | rs12565140-? |
SNPs | rs12565140 |
Merged | 0 |
SNP id current | 12565140 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.136 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.425 |
%95 Ci | [1.247-1.629] unit increase |
Platform | Illumina [563945] |
CNV | N |
Mapped trait | estradiol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004697 |
Study accession | GCST001914 |