SNP Detail For rs12554707
1.Mapping Information
Human SNP ID rs12554707
Human chromosome chr9
Human SNP position 22842203
Pig chromosome chr1
Pig SNP position 223069457
2.Annotation Information
PubMed ID22952603
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22952603
StudyGenome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).
Disease/TraitResponse to amphetamines
Initial sample1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals
Replication sampleNA
Region9p21.3
Chromosome idchr9
Chromosome position22842203
Reported geneintergenic
Mapped geneLINC01239 - LOC105375990
Upstream gene id441389
Downstream gene id105375990
SNP gene ids
Upstream gene distance17990
Downstream gene distance74882
SNP risk allelers12554707-?
SNPsrs12554707
Merged0
SNP id current12554707
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(SF5)
Or beta
%95 Ci
PlatformAffymetrix [5476100] (imputed)
CNVN
Mapped traitresponse to drug
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0042493
Study accessionGCST001651