SNP Detail For rs12554086
1.Mapping Information
Human SNP ID rs12554086
Human chromosome chr9
Human SNP position 80192588
Pig chromosome chr1
Pig SNP position 259915137
2.Annotation Information
PubMed ID20031603
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20031603
StudyA genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.
Disease/TraitRR interval (heart rate)
Initial sample2,325 European ancestry individuals
Replication sampleNA
Region9q21.31
Chromosome idchr9
Chromosome position80192588
Reported geneintergenic
Mapped geneLINC01507 - LOC105376102
Upstream gene id101927477
Downstream gene id105376102
SNP gene ids
Upstream gene distance158033
Downstream gene distance76941
SNP risk allelers12554086-A
SNPsrs12554086
Merged0
SNP id current12554086
Contextintergenic_variant
Intergenic1
Allele frequency0.39
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta0.16
%95 Ci[0.10-0.22] unit decrease
PlatformIllumina [~ 318327]
CNVN
Mapped traitRR interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004831
Study accessionGCST000451