SNP Detail For rs12546962
1.Mapping Information
Human SNP ID rs12546962
Human chromosome chr8
Human SNP position 9340675
Pig chromosome chr15
Pig SNP position 63252576
2.Annotation Information
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region8p23.1
Chromosome idchr8
Chromosome position9340675
Reported geneLOC157273
Mapped geneLOC157273 - LOC105379228
Upstream gene id157273
Downstream gene id105379228
SNP gene ids
Upstream gene distance5595
Downstream gene distance10591
SNP risk allelers12546962-G
SNPsrs12546962
Merged0
SNP id current12546962
Contextintron_variant
Intergenic1
Allele frequency0.265
P value0.000004
Pvalue mlog5.39794000867203
P value text(EA)
Or beta0.016
%95 Ci[0.0093-0.0231] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region8p23.1
Chromosome idchr8
Chromosome position9340675
Reported geneLOC157273
Mapped geneLOC157273 - LOC105379228
Upstream gene id157273
Downstream gene id105379228
SNP gene ids
Upstream gene distance5595
Downstream gene distance10591
SNP risk allelers12546962-G
SNPsrs12546962
Merged0
SNP id current12546962
Contextintron_variant
Intergenic1
Allele frequency0.262
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.016
%95 Ci[0.0089-0.0223] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783