SNP Detail For rs12542743
1.Mapping Information
Human SNP ID rs12542743
Human chromosome chr8
Human SNP position 32460839
Pig chromosome chr15
Pig SNP position 60260807
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitChagas cardiomyopathy in Tripanosoma cruzi seropositivity
Initial sample207 Brazilian ancestry cases, 306 Brazilian ancestry controls
Replication sampleNA
Region8p12
Chromosome idchr8
Chromosome position32460839
Reported geneNR
Mapped geneNRG1
Upstream gene id
Downstream gene id
SNP gene ids3084
Upstream gene distance
Downstream gene distance
SNP risk allelers12542743-?
SNPsrs12542743
Merged0
SNP id current12542743
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitChagas cardiomyopathy, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005529, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002285