SNP Detail For rs12540205
1.Mapping Information
Human SNP ID rs12540205
Human chromosome chr7
Human SNP position 105670146
Pig chromosome chr9
Pig SNP position 116300264
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region7q22.3
Chromosome idchr7
Chromosome position105670146
Reported geneNR
Mapped geneATXN7L1
Upstream gene id
Downstream gene id
SNP gene ids222255
Upstream gene distance
Downstream gene distance
SNP risk allelers12540205-C
SNPsrs12540205
Merged
SNP id current12540205
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.0526316
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048