Human SNP ID | rs12539793 |
---|---|
Human chromosome | chr7 |
Human SNP position | 25932240 |
Pig chromosome | chr18 |
Pig SNP position | 51229979 |
PubMed ID | 26422391 |
---|---|
Journal | J Pediatr Orthop |
Link | www.ncbi.nlm.nih.gov/pubmed/26422391 |
Study | Candidate Loci are Revealed by an Initial Genome-wide Association Study of Juvenile Osteochondritis Dissecans. |
Disease/Trait | Juvenile osteochondritis dissecans |
Initial sample | 209 European ancestry cases, 1,855 European ancestry controls |
Replication sample | NA |
Region | 7p15.2 |
Chromosome id | chr7 |
Chromosome position | 25932240 |
Reported gene | MIR148A |
Mapped gene | LOC100506236 - LOC105375199 |
Upstream gene id | 100506236 |
Downstream gene id | 105375199 |
SNP gene ids | |
Upstream gene distance | 69975 |
Downstream gene distance | 6847 |
SNP risk allele | rs12539793-? |
SNPs | rs12539793 |
Merged | |
SNP id current | 12539793 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 2.113 |
%95 Ci | [NR] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | Osteochondritis Dissecans |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0010886 |
Study accession | GCST003138 |