SNP Detail For rs12539793
1.Mapping Information
Human SNP ID rs12539793
Human chromosome chr7
Human SNP position 25932240
Pig chromosome chr18
Pig SNP position 51229979
2.Annotation Information
PubMed ID26422391
JournalJ Pediatr Orthop
Linkwww.ncbi.nlm.nih.gov/pubmed/26422391
StudyCandidate Loci are Revealed by an Initial Genome-wide Association Study of Juvenile Osteochondritis Dissecans.
Disease/TraitJuvenile osteochondritis dissecans
Initial sample209 European ancestry cases, 1,855 European ancestry controls
Replication sampleNA
Region7p15.2
Chromosome idchr7
Chromosome position25932240
Reported geneMIR148A
Mapped geneLOC100506236 - LOC105375199
Upstream gene id100506236
Downstream gene id105375199
SNP gene ids
Upstream gene distance69975
Downstream gene distance6847
SNP risk allelers12539793-?
SNPsrs12539793
Merged
SNP id current12539793
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000001
Pvalue mlog6
P value text
Or beta2.113
%95 Ci[NR]
PlatformIllumina [NR]
CNVN
Mapped traitOsteochondritis Dissecans
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0010886
Study accessionGCST003138