Human SNP ID | rs12537 |
---|---|
Human chromosome | chr22 |
Human SNP position | 30027471 |
Pig chromosome | chr14 |
Pig SNP position | 50060943 |
PubMed ID | 22197929 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22197929 |
Study | A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy. |
Disease/Trait | IgA nephropathy |
Initial sample | 1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls |
Replication sample | 2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls |
Region | 22q12.2 |
Chromosome id | chr22 |
Chromosome position | 30027471 |
Reported gene | MTMR3 |
Mapped gene | MTMR3, HORMAD2-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8897, 101929664 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12537-C |
SNPs | rs12537 |
Merged | 0 |
SNP id current | 12537 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.81 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | |
Or beta | 1.28 |
%95 Ci | [1.19-1.39] |
Platform | Illumina [444882] |
CNV | N |
Mapped trait | IGA glomerulonephritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004194 |
Study accession | GCST001364 |
PubMed ID | 26028593 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26028593 |
Study | Identification of new susceptibility loci for IgA nephropathy in Han Chinese. |
Disease/Trait | IgA nephropathy |
Initial sample | 1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls |
Replication sample | 6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls |
Region | 22q12.2 |
Chromosome id | chr22 |
Chromosome position | 30027471 |
Reported gene | HORMAD2 |
Mapped gene | MTMR3, HORMAD2-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8897, 101929664 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12537-C |
SNPs | rs12537 |
Merged | 0 |
SNP id current | 12537 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.817 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.407 |
%95 Ci | [1.258-1.573] |
Platform | Illumina [3792949] (imputed) |
CNV | N |
Mapped trait | IGA glomerulonephritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004194 |
Study accession | GCST002943 |