Human SNP ID | rs12534221 |
---|---|
Human chromosome | chr7 |
Human SNP position | 131603231 |
Pig chromosome | chr18 |
Pig SNP position | 18495330 |
PubMed ID | 20932310 |
---|---|
Journal | BMC Neurol |
Link | www.ncbi.nlm.nih.gov/pubmed/20932310 |
Study | Genome-wide association reveals genetic effects on human Aβ42 and τ protein levels in cerebrospinal fluids: a case control study. |
Disease/Trait | Cerebrospinal AB1-42 levels |
Initial sample | 172 European ancestry Alzheimer__s disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls |
Replication sample | NA |
Region | 7q32.3 |
Chromosome id | chr7 |
Chromosome position | 131603231 |
Reported gene | intergenic |
Mapped gene | PODXL - EEF1B2P6 |
Upstream gene id | 5420 |
Downstream gene id | 647030 |
SNP gene ids | |
Upstream gene distance | 46614 |
Downstream gene distance | 58669 |
SNP risk allele | rs12534221-A |
SNPs | rs12534221 |
Merged | 0 |
SNP id current | 12534221 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (Controls) |
Or beta | |
%95 Ci | |
Platform | Illumina [498205] |
CNV | N |
Mapped trait | beta-amyloid 1-42 measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004670 |
Study accession | GCST000827 |