Human SNP ID | rs12530 |
---|---|
Human chromosome | chr22 |
Human SNP position | 32387917 |
Pig chromosome | chr5 |
Pig SNP position | 12392145 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 22q12.3 |
Chromosome id | chr22 |
Chromosome position | 32387917 |
Reported gene | NR |
Mapped gene | RTCB |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51493 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12530-C |
SNPs | rs12530 |
Merged | 0 |
SNP id current | 12530 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.18432396929239 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (IGP40) |
Or beta | 0.1828 |
%95 Ci | [0.11-0.26] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |