SNP Detail For rs12529935
1.Mapping Information
Human SNP ID rs12529935
Human chromosome chr6
Human SNP position 90305320
Pig chromosome chr1
Pig SNP position 65285270
2.Annotation Information
PubMed ID23273568
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23273568
StudyMeta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.
Disease/TraitSystemic lupus erythematosus
Initial sample1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls
Replication sample3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls
Region6q15
Chromosome idchr6
Chromosome position90305320
Reported geneBACH2
Mapped geneBACH2 - MIR4464
Upstream gene id60468
Downstream gene id100616109
SNP gene ids
Upstream gene distance8412
Downstream gene distance7422
SNP risk allelers12529935-C
SNPsrs12529935
Merged0
SNP id current12529935
Contextintergenic_variant
Intergenic1
Allele frequency0.91
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta1.3514
%95 Ci
PlatformIllumina [2100739] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST001795