Human SNP ID | rs12529935 |
---|---|
Human chromosome | chr6 |
Human SNP position | 90305320 |
Pig chromosome | chr1 |
Pig SNP position | 65285270 |
PubMed ID | 23273568 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23273568 |
Study | Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls |
Replication sample | 3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls |
Region | 6q15 |
Chromosome id | chr6 |
Chromosome position | 90305320 |
Reported gene | BACH2 |
Mapped gene | BACH2 - MIR4464 |
Upstream gene id | 60468 |
Downstream gene id | 100616109 |
SNP gene ids | |
Upstream gene distance | 8412 |
Downstream gene distance | 7422 |
SNP risk allele | rs12529935-C |
SNPs | rs12529935 |
Merged | 0 |
SNP id current | 12529935 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.91 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 1.3514 |
%95 Ci | |
Platform | Illumina [2100739] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST001795 |