SNP Detail For rs12528886
1.Mapping Information
Human SNP ID rs12528886
Human chromosome chr6
Human SNP position 130132737
Pig chromosome chr1
Pig SNP position 36639801
2.Annotation Information
PubMed ID26379185
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26379185
StudyNo Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.
Disease/TraitMild influenza (H1N1) infection
Initial sample107 European ancestry mild cases, 549 European ancestry population controls
Replication sampleNA
Region6q23.1
Chromosome idchr6
Chromosome position130132737
Reported geneL3MBTL3
Mapped geneL3MBTL3
Upstream gene id
Downstream gene id
SNP gene ids84456
Upstream gene distance
Downstream gene distance
SNP risk allelers12528886-?
SNPsrs12528886
Merged
SNP id current12528886
Contextintron_variant
Intergenic0
Allele frequency0.006579
P value0.000000000003
Pvalue mlog11.5228787452803
P value text
Or beta13.21
%95 Ci[12.29-14.13]
PlatformAffymetrix [547296]
CNVN
Mapped traitinfluenza A (H1N1)
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1001488
Study accessionGCST003124
PubMed ID26379185
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26379185
StudyNo Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.
Disease/TraitInfluenza A (H1N1) infection
Initial sample49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls
Replication sampleNA
Region6q23.1
Chromosome idchr6
Chromosome position130132737
Reported geneL3MBTL3
Mapped geneL3MBTL3
Upstream gene id
Downstream gene id
SNP gene ids84456
Upstream gene distance
Downstream gene distance
SNP risk allelers12528886-?
SNPsrs12528886
Merged
SNP id current12528886
Contextintron_variant
Intergenic0
Allele frequency0.006579
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta8.736
%95 Ci[3.488-21.88]
PlatformAffymetrix [547296]
CNVN
Mapped traitinfluenza A (H1N1)
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1001488
Study accessionGCST003125