SNP Detail For rs12526480
1.Mapping Information
Human SNP ID rs12526480
Human chromosome chr6
Human SNP position 25533306
Pig chromosome chr7
Pig SNP position 21566454
2.Annotation Information
PubMed ID22423221
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22423221
StudyA meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.
Disease/TraitMean platelet volume
Initial sample16,388 African American individuals
Replication sampleNA
Region6p22.2
Chromosome idchr6
Chromosome position25533306
Reported geneLRRC16A
Mapped geneLRRC16A
Upstream gene id
Downstream gene id
SNP gene ids55604
Upstream gene distance
Downstream gene distance
SNP risk allelers12526480-T
SNPsrs12526480
Merged0
SNP id current12526480
Contextintron_variant
Intergenic0
Allele frequency0.305
P value0.000000009
Pvalue mlog8.04575749056067
P value text(Platelet Count)
Or beta4.39
%95 Ci[2.9-5.88] 10^9 L decrease
PlatformAffymetrix, Illumina [~ 2200000] (imputed)
CNVN
Mapped traitplatelet count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004309
Study accessionGCST001439