Human SNP ID | rs12526480 |
---|---|
Human chromosome | chr6 |
Human SNP position | 25533306 |
Pig chromosome | chr7 |
Pig SNP position | 21566454 |
PubMed ID | 22423221 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22423221 |
Study | A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans. |
Disease/Trait | Mean platelet volume |
Initial sample | 16,388 African American individuals |
Replication sample | NA |
Region | 6p22.2 |
Chromosome id | chr6 |
Chromosome position | 25533306 |
Reported gene | LRRC16A |
Mapped gene | LRRC16A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55604 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12526480-T |
SNPs | rs12526480 |
Merged | 0 |
SNP id current | 12526480 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.305 |
P value | 0.000000009 |
Pvalue mlog | 8.04575749056067 |
P value text | (Platelet Count) |
Or beta | 4.39 |
%95 Ci | [2.9-5.88] 10^9 L decrease |
Platform | Affymetrix, Illumina [~ 2200000] (imputed) |
CNV | N |
Mapped trait | platelet count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004309 |
Study accession | GCST001439 |