SNP Detail For rs12523822
1.Mapping Information
Human SNP ID rs12523822
Human chromosome chr6
Human SNP position 154633286
Pig chromosome chr1
Pig SNP position 14234529
2.Annotation Information
PubMed ID26305897
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26305897
StudyGenome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).
Disease/TraitDiabetic kidney disease
Initial sample1,564 African American cases, 369 African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry dia
Replication sample950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 Eu
Region6q25.2
Chromosome idchr6
Chromosome position154633286
Reported geneSCAF8, CNKSR3
Mapped geneRPS4XP8 - SCAF8
Upstream gene id646269
Downstream gene id22828
SNP gene ids
Upstream gene distance56145
Downstream gene distance100092
SNP risk allelers12523822-?
SNPsrs12523822
Merged
SNP id current12523822
Contextintergenic_variant
Intergenic1
Allele frequency0.74
P value0.000000006
Pvalue mlog8.22184874961635
P value text(American Indian, dominant )
Or beta1.754386
%95 Ci
PlatformAffymetrix [NR]
CNVN
Mapped traitdiabetic nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000401
Study accessionGCST003098