SNP Detail For rs12521868
1.Mapping Information
Human SNP ID rs12521868
Human chromosome chr5
Human SNP position 132448701
Pig chromosome chr2
Pig SNP position 140145351
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region5q31.1
Chromosome idchr5
Chromosome position132448701
Reported geneIL3, IRF1, SLC22A5, SLC22A4
Mapped geneC5orf56
Upstream gene id
Downstream gene id
SNP gene ids441108
Upstream gene distance
Downstream gene distance
SNP risk allelers12521868-T
SNPsrs12521868
Merged0
SNP id current12521868
Contextintron_variant
Intergenic0
Allele frequency0.422
P value1E-20
Pvalue mlog20
P value text
Or beta1.23
%95 Ci[1.18-1.28]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879