Human SNP ID | rs12521868 |
---|---|
Human chromosome | chr5 |
Human SNP position | 132448701 |
Pig chromosome | chr2 |
Pig SNP position | 140145351 |
PubMed ID | 21102463 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21102463 |
Study | Genome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci. |
Disease/Trait | Crohn__s disease |
Initial sample | 6,333 European ancestry cases, 15,056 European ancestry controls |
Replication sample | 15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 132448701 |
Reported gene | IL3, IRF1, SLC22A5, SLC22A4 |
Mapped gene | C5orf56 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 441108 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12521868-T |
SNPs | rs12521868 |
Merged | 0 |
SNP id current | 12521868 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.422 |
P value | 1E-20 |
Pvalue mlog | 20 |
P value text | |
Or beta | 1.23 |
%95 Ci | [1.18-1.28] |
Platform | Affymetrix, Illumina [953241] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST000879 |