SNP Detail For rs12518099
1.Mapping Information
Human SNP ID rs12518099
Human chromosome chr5
Human SNP position 90250292
Pig chromosome chr2
Pig SNP position 100569545
2.Annotation Information
PubMed ID19734900
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19734900
StudyGenetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.
Disease/TraitType 2 diabetes and other traits
Initial sample679 European ancestry cases, 697 European ancestry controls
Replication sample5,579 European ancestry cases, 7,096 European ancestry controls
Region5q14.3
Chromosome idchr5
Chromosome position90250292
Reported geneLOC72901, CETN3
Mapped geneLINC01339
Upstream gene id
Downstream gene id
SNP gene ids101929495
Upstream gene distance
Downstream gene distance
SNP risk allelers12518099-C
SNPsrs12518099
Merged0
SNP id current12518099
Contextintron_variant
Intergenic0
Allele frequency0.23
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta1.16
%95 Ci[1.10-1.22]
PlatformIllumina [392365]
CNVN
Mapped traittype II diabetes mellitus, autoantibody measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360, http://www.ebi.ac.uk/efo/EFO_0004866
Study accessionGCST000478