Human SNP ID | rs12518099 |
---|---|
Human chromosome | chr5 |
Human SNP position | 90250292 |
Pig chromosome | chr2 |
Pig SNP position | 100569545 |
PubMed ID | 19734900 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19734900 |
Study | Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia. |
Disease/Trait | Type 2 diabetes and other traits |
Initial sample | 679 European ancestry cases, 697 European ancestry controls |
Replication sample | 5,579 European ancestry cases, 7,096 European ancestry controls |
Region | 5q14.3 |
Chromosome id | chr5 |
Chromosome position | 90250292 |
Reported gene | LOC72901, CETN3 |
Mapped gene | LINC01339 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101929495 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12518099-C |
SNPs | rs12518099 |
Merged | 0 |
SNP id current | 12518099 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.23 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.10-1.22] |
Platform | Illumina [392365] |
CNV | N |
Mapped trait | type II diabetes mellitus, autoantibody measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360, http://www.ebi.ac.uk/efo/EFO_0004866 |
Study accession | GCST000478 |