SNP Detail For rs12517041
1.Mapping Information
Human SNP ID rs12517041
Human chromosome chr5
Human SNP position 23301799
Pig chromosome chr14
Pig SNP position 41706043
2.Annotation Information
PubMed ID25972035
JournalJ Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25972035
StudyAssociation of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.
Disease/TraitCalcium levels
Initial sample4,558 Korean ancestry individuals
Replication sample4,093 Korean ancestry individuals
Region5p14.2
Chromosome idchr5
Chromosome position23301799
Reported genePRDM9
Mapped geneLOC105374687 - LOC391771
Upstream gene id105374687
Downstream gene id391771
SNP gene ids
Upstream gene distance130204
Downstream gene distance2164
SNP risk allelers12517041-G
SNPsrs12517041
Merged0
SNP id current12517041
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.056
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta0.00411
%95 Ci[0.0025-0.0057] unit increase
PlatformAffymetrix [1219546] (imputed)
CNVN
Mapped traitcalcium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004838
Study accessionGCST002911