Human SNP ID | rs12517041 |
---|---|
Human chromosome | chr5 |
Human SNP position | 23301799 |
Pig chromosome | chr14 |
Pig SNP position | 41706043 |
PubMed ID | 25972035 |
---|---|
Journal | J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25972035 |
Study | Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians. |
Disease/Trait | Calcium levels |
Initial sample | 4,558 Korean ancestry individuals |
Replication sample | 4,093 Korean ancestry individuals |
Region | 5p14.2 |
Chromosome id | chr5 |
Chromosome position | 23301799 |
Reported gene | PRDM9 |
Mapped gene | LOC105374687 - LOC391771 |
Upstream gene id | 105374687 |
Downstream gene id | 391771 |
SNP gene ids | |
Upstream gene distance | 130204 |
Downstream gene distance | 2164 |
SNP risk allele | rs12517041-G |
SNPs | rs12517041 |
Merged | 0 |
SNP id current | 12517041 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.056 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 0.00411 |
%95 Ci | [0.0025-0.0057] unit increase |
Platform | Affymetrix [1219546] (imputed) |
CNV | N |
Mapped trait | calcium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004838 |
Study accession | GCST002911 |