SNP Detail For rs12516208
1.Mapping Information
Human SNP ID rs12516208
Human chromosome chr5
Human SNP position 115961248
Pig chromosome chr2
Pig SNP position 125023685
2.Annotation Information
PubMed ID25378659
JournalJ Lipid Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25378659
StudyGenetic Loci Associated with Circulating Levels of Very Long-Chain Saturated Fatty Acids.
Disease/TraitVery long-chain saturated fatty acid levels (fatty acid 20:0)
Initial sample10,129 European ancestry individuals
Replication sampleNA
Region5q23.1
Chromosome idchr5
Chromosome position115961248
Reported geneFLJ90650
Mapped geneLVRN
Upstream gene id
Downstream gene id
SNP gene ids206338
Upstream gene distance
Downstream gene distance
SNP risk allelers12516208-C
SNPsrs12516208
Merged0
SNP id current12516208
Contextupstream_gene_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta4.598
%95 Ci[NR] Z score increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitvery long-chain saturated fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006796
Study accessionGCST002690