SNP Detail For rs12514883
1.Mapping Information
Human SNP ID rs12514883
Human chromosome chr5
Human SNP position 17790982
Pig chromosome chr16
Pig SNP position 7170531
2.Annotation Information
PubMed ID25628645
JournalFront Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25628645
StudyIdentification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs).
Disease/TraitResponse to Homoharringtonine (cytotoxicity)
Initial sample93 African-American ancestry lymphoblastoid cell lines, 91 European ancestry lymphoblastoid cell lines, 94 Han Chinese ancestry lymphoblastoid cell lines
Replication sampleNA
Region5p15.1
Chromosome idchr5
Chromosome position17790982
Reported geneintergenic
Mapped geneLOC105374666 - LOC646241
Upstream gene id105374666
Downstream gene id646241
SNP gene ids
Upstream gene distance5249
Downstream gene distance16295
SNP risk allelers12514883-?
SNPsrs12514883
Merged0
SNP id current12514883
Contextintron_variant
Intergenic1
Allele frequency
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [6750581] (imputed)
CNVN
Mapped traitresponse to homoharringtonine, cytotoxicity measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006996, http://www.ebi.ac.uk/efo/EFO_0006952
Study accessionGCST002749