Human SNP ID | rs12514883 |
---|---|
Human chromosome | chr5 |
Human SNP position | 17790982 |
Pig chromosome | chr16 |
Pig SNP position | 7170531 |
PubMed ID | 25628645 |
---|---|
Journal | Front Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25628645 |
Study | Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs). |
Disease/Trait | Response to Homoharringtonine (cytotoxicity) |
Initial sample | 93 African-American ancestry lymphoblastoid cell lines, 91 European ancestry lymphoblastoid cell lines, 94 Han Chinese ancestry lymphoblastoid cell lines |
Replication sample | NA |
Region | 5p15.1 |
Chromosome id | chr5 |
Chromosome position | 17790982 |
Reported gene | intergenic |
Mapped gene | LOC105374666 - LOC646241 |
Upstream gene id | 105374666 |
Downstream gene id | 646241 |
SNP gene ids | |
Upstream gene distance | 5249 |
Downstream gene distance | 16295 |
SNP risk allele | rs12514883-? |
SNPs | rs12514883 |
Merged | 0 |
SNP id current | 12514883 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [6750581] (imputed) |
CNV | N |
Mapped trait | response to homoharringtonine, cytotoxicity measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006996, http://www.ebi.ac.uk/efo/EFO_0006952 |
Study accession | GCST002749 |