SNP Detail For rs12506899
1.Mapping Information
Human SNP ID rs12506899
Human chromosome chr4
Human SNP position 73453566
Pig chromosome chr8
Pig SNP position 73795296
2.Annotation Information
PubMed ID23300138
JournalGut
Linkwww.ncbi.nlm.nih.gov/pubmed/23300138
StudyA genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.
Disease/TraitTumor biomarkers
Initial sample3,451 Han Chinese ancestry individuals
Replication sample10,326 Chinese ancestry individuals
Region4q13.3
Chromosome idchr4
Chromosome position73453566
Reported geneAFP
Mapped geneAFP
Upstream gene id
Downstream gene id
SNP gene ids174
Upstream gene distance
Downstream gene distance
SNP risk allelers12506899-G
SNPsrs12506899
Merged0
SNP id current12506899
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.32
P value0.000000000000000003
Pvalue mlog17.5228787452803
P value text(AFP)
Or beta0.065
%95 Ci[0.032-0.098] ng/ml decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitcancer biomarker measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005127
Study accessionGCST001808