Human SNP ID | rs12506899 |
---|---|
Human chromosome | chr4 |
Human SNP position | 73453566 |
Pig chromosome | chr8 |
Pig SNP position | 73795296 |
PubMed ID | 23300138 |
---|---|
Journal | Gut |
Link | www.ncbi.nlm.nih.gov/pubmed/23300138 |
Study | A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk. |
Disease/Trait | Tumor biomarkers |
Initial sample | 3,451 Han Chinese ancestry individuals |
Replication sample | 10,326 Chinese ancestry individuals |
Region | 4q13.3 |
Chromosome id | chr4 |
Chromosome position | 73453566 |
Reported gene | AFP |
Mapped gene | AFP |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 174 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12506899-G |
SNPs | rs12506899 |
Merged | 0 |
SNP id current | 12506899 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.000000000000000003 |
Pvalue mlog | 17.5228787452803 |
P value text | (AFP) |
Or beta | 0.065 |
%95 Ci | [0.032-0.098] ng/ml decrease |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | cancer biomarker measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005127 |
Study accession | GCST001808 |