SNP Detail For rs1250563
1.Mapping Information
Human SNP ID rs1250563
Human chromosome chr10
Human SNP position 79287626
Pig chromosome chr14
Pig SNP position 88278572
2.Annotation Information
PubMed ID26301688
JournalNat Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26301688
StudyMeta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.
Disease/TraitPediatric autoimmune diseases
Initial sample97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry
Replication sampleNA
Region10q22.3
Chromosome idchr10
Chromosome position79287626
Reported geneZMIZ1
Mapped geneZMIZ1
Upstream gene id
Downstream gene id
SNP gene ids57178
Upstream gene distance
Downstream gene distance
SNP risk allelers1250563-C
SNPsrs1250563
Merged
SNP id current1250563
Contextintron_variant
Intergenic0
Allele frequency0.29
P value0.00000001
Pvalue mlog8
P value text
Or beta
%95 Ci
PlatformIllumina [7347414] (imputed)
CNVN
Mapped traitautoimmune thyroid disease, type I diabetes mellitus, Common variable immunodeficiency, chronic childhood arthritis, ankylosing spondylitis, psoriasis, celiac disease, ulcerative colitis, Crohn__s disease, autoimmune disease, systemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006812, http://www.ebi.ac.uk/efo/EFO_0001359, http://www.orpha.net/ORDO/Orphanet_1572, http://www.ebi.ac.uk/efo/EFO_0002609, http://www.ebi.ac.uk/efo/EFO_0003898, http://www.ebi.ac.uk/efo/EFO_0000676, http://www.ebi.ac.uk/efo
Study accessionGCST003097