Human SNP ID | rs1250552 |
---|---|
Human chromosome | chr10 |
Human SNP position | 79298270 |
Pig chromosome | chr14 |
Pig SNP position | 88289403 |
PubMed ID | 20190752 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20190752 |
Study | Multiple common variants for celiac disease influencing immune gene expression. |
Disease/Trait | Celiac disease |
Initial sample | 4,533 European ancestry cases, 10,750 European ancestry controls |
Replication sample | 4,918 European ancestry cases, 5,684 European ancestry controls |
Region | 10q22.3 |
Chromosome id | chr10 |
Chromosome position | 79298270 |
Reported gene | ZMIZ1 |
Mapped gene | ZMIZ1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57178 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1250552-? |
SNPs | rs1250552 |
Merged | 0 |
SNP id current | 1250552 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.53 |
P value | 0.0000000009 |
Pvalue mlog | 9.04575749056067 |
P value text | |
Or beta | 1.12 |
%95 Ci | [1.09-1.16] |
Platform | Illumina [292387] |
CNV | N |
Mapped trait | celiac disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001060 |
Study accession | GCST000612 |