SNP Detail For rs1250552
1.Mapping Information
Human SNP ID rs1250552
Human chromosome chr10
Human SNP position 79298270
Pig chromosome chr14
Pig SNP position 88289403
2.Annotation Information
PubMed ID20190752
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20190752
StudyMultiple common variants for celiac disease influencing immune gene expression.
Disease/TraitCeliac disease
Initial sample4,533 European ancestry cases, 10,750 European ancestry controls
Replication sample4,918 European ancestry cases, 5,684 European ancestry controls
Region10q22.3
Chromosome idchr10
Chromosome position79298270
Reported geneZMIZ1
Mapped geneZMIZ1
Upstream gene id
Downstream gene id
SNP gene ids57178
Upstream gene distance
Downstream gene distance
SNP risk allelers1250552-?
SNPsrs1250552
Merged0
SNP id current1250552
Contextintron_variant
Intergenic0
Allele frequency0.53
P value0.0000000009
Pvalue mlog9.04575749056067
P value text
Or beta1.12
%95 Ci[1.09-1.16]
PlatformIllumina [292387]
CNVN
Mapped traitceliac disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001060
Study accessionGCST000612