Human SNP ID | rs12497795 |
---|---|
Human chromosome | chr3 |
Human SNP position | 88928747 |
Pig chromosome | chr13 |
Pig SNP position | 177987945 |
PubMed ID | 24024966 |
---|---|
Journal | J Clin Periodontol |
Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
Study | Genome-wide association study of chronic periodontitis in a general German population. |
Disease/Trait | Periodontitis (Mean PAL) |
Initial sample | up to 4,032 European ancestry individuals |
Replication sample | NA |
Region | 3p11.1 |
Chromosome id | chr3 |
Chromosome position | 88928747 |
Reported gene | EPHA3 |
Mapped gene | LOC100506944 - ICE2P2 |
Upstream gene id | 100506944 |
Downstream gene id | 728432 |
SNP gene ids | |
Upstream gene distance | 460697 |
Downstream gene distance | 19451 |
SNP risk allele | rs12497795-T |
SNPs | rs12497795 |
Merged | 0 |
SNP id current | 12497795 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.1 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Age 20-81 years) |
Or beta | 0.0778 |
%95 Ci | [0.046-0.110] unit decrease |
Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST002127 |