SNP Detail For rs12497795
1.Mapping Information
Human SNP ID rs12497795
Human chromosome chr3
Human SNP position 88928747
Pig chromosome chr13
Pig SNP position 177987945
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (Mean PAL)
Initial sampleup to 4,032 European ancestry individuals
Replication sampleNA
Region3p11.1
Chromosome idchr3
Chromosome position88928747
Reported geneEPHA3
Mapped geneLOC100506944 - ICE2P2
Upstream gene id100506944
Downstream gene id728432
SNP gene ids
Upstream gene distance460697
Downstream gene distance19451
SNP risk allelers12497795-T
SNPsrs12497795
Merged0
SNP id current12497795
Contextintergenic_variant
Intergenic1
Allele frequency0.1
P value0.000002
Pvalue mlog5.69897000433601
P value text(Age 20-81 years)
Or beta0.0778
%95 Ci[0.046-0.110] unit decrease
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002127