SNP Detail For rs12497655
1.Mapping Information
Human SNP ID rs12497655
Human chromosome chr3
Human SNP position 117045163
Pig chromosome chr13
Pig SNP position 152633780
2.Annotation Information
PubMed ID26305897
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26305897
StudyGenome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).
Disease/TraitDiabetic kidney disease
Initial sample1,564 African American cases, 369 African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry dia
Replication sample950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 Eu
Region3q13.31
Chromosome idchr3
Chromosome position117045163
Reported geneNR
Mapped geneLINC00901 - LOC105374054
Upstream gene id100506724
Downstream gene id105374054
SNP gene ids
Upstream gene distance112925
Downstream gene distance194054
SNP risk allelers12497655-?
SNPsrs12497655
Merged
SNP id current12497655
Contextintron_variant
Intergenic1
Allele frequency0.73
P value0.000003
Pvalue mlog5.52287874528033
P value text(American Indian, additive )
Or beta1.4285715
%95 Ci
PlatformAffymetrix [NR]
CNVN
Mapped traitdiabetic nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000401
Study accessionGCST003098