Human SNP ID | rs12493050 |
---|---|
Human chromosome | chr3 |
Human SNP position | 183147285 |
Pig chromosome | chr13 |
Pig SNP position | 130598777 |
PubMed ID | 26503763 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/26503763 |
Study | Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder. |
Disease/Trait | Subjective response to lithium treatment |
Initial sample | 1,639 European ancestry bipolar disorder responder cases, 8,899 European ancestry controls |
Replication sample | NA |
Region | 3q27.1 |
Chromosome id | chr3 |
Chromosome position | 183147285 |
Reported gene | MCF2L2, MCCC1, LAMP3, DCUN1D1, ATP11B |
Mapped gene | LAMP3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 27074 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12493050-G |
SNPs | rs12493050 |
Merged | 0 |
SNP id current | 12493050 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | |
Or beta | 1.27 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [> 8000000] (imputed) |
CNV | N |
Mapped trait | bipolar disorder, response to lithium ion |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000289, http://purl.obolibrary.org/obo/GO_0010226 |
Study accession | GCST003158 |