SNP Detail For rs12493050
1.Mapping Information
Human SNP ID rs12493050
Human chromosome chr3
Human SNP position 183147285
Pig chromosome chr13
Pig SNP position 130598777
2.Annotation Information
PubMed ID26503763
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/26503763
StudyGenome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.
Disease/TraitSubjective response to lithium treatment
Initial sample1,639 European ancestry bipolar disorder responder cases, 8,899 European ancestry controls
Replication sampleNA
Region3q27.1
Chromosome idchr3
Chromosome position183147285
Reported geneMCF2L2, MCCC1, LAMP3, DCUN1D1, ATP11B
Mapped geneLAMP3
Upstream gene id
Downstream gene id
SNP gene ids27074
Upstream gene distance
Downstream gene distance
SNP risk allelers12493050-G
SNPsrs12493050
Merged0
SNP id current12493050
Contextintron_variant
Intergenic0
Allele frequency0.2
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta1.27
%95 Ci[NR]
PlatformAffymetrix, Illumina [> 8000000] (imputed)
CNVN
Mapped traitbipolar disorder, response to lithium ion
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289, http://purl.obolibrary.org/obo/GO_0010226
Study accessionGCST003158