Human SNP ID | rs12489828 |
---|---|
Human chromosome | chr3 |
Human SNP position | 52532998 |
Pig chromosome | chr13 |
Pig SNP position | 37891432 |
PubMed ID | 25673412 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 3p21.1 |
Chromosome id | chr3 |
Chromosome position | 52532998 |
Reported gene | NT5DC2 |
Mapped gene | NT5DC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64943 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12489828-T |
SNPs | rs12489828 |
Merged | 0 |
SNP id current | 12489828 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5486 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | (EA, women) |
Or beta | 0.0294 |
%95 Ci | [0.02-0.038] unit decrease |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 3p21.1 |
Chromosome id | chr3 |
Chromosome position | 52532998 |
Reported gene | NT5DC2 |
Mapped gene | NT5DC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64943 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12489828-T |
SNPs | rs12489828 |
Merged | 0 |
SNP id current | 12489828 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5488 |
P value | 0.00000000007 |
Pvalue mlog | 10.1549019599857 |
P value text | (EA) |
Or beta | 0.0227 |
%95 Ci | [0.016-0.03] unit decrease |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 3p21.1 |
Chromosome id | chr3 |
Chromosome position | 52532998 |
Reported gene | NT5DC2 |
Mapped gene | NT5DC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64943 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12489828-T |
SNPs | rs12489828 |
Merged | 0 |
SNP id current | 12489828 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5425 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | (women) |
Or beta | 0.0277 |
%95 Ci | [0.019-0.037] unit decrease |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 3p21.1 |
Chromosome id | chr3 |
Chromosome position | 52532998 |
Reported gene | NT5DC2 |
Mapped gene | NT5DC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64943 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12489828-T |
SNPs | rs12489828 |
Merged | 0 |
SNP id current | 12489828 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5409 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 0.0215 |
%95 Ci | [0.015-0.028] unit decrease |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |