SNP Detail For rs12489120
1.Mapping Information
Human SNP ID rs12489120
Human chromosome chr3
Human SNP position 4978778
Pig chromosome chr13
Pig SNP position 67831796
2.Annotation Information
PubMed ID26626624
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26626624
StudyGenome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.
Disease/TraitPsoriasis vulgaris
Initial sample4,007 European ancestry cases, 4,934 European ancestry controls
Replication sampleup to 9,075 European ancestry cases, up to European ancestry 12,726 controls
Region3p26.1
Chromosome idchr3
Chromosome position4978778
Reported geneBHLHE40
Mapped geneBHLHE40-AS1
Upstream gene id
Downstream gene id
SNP gene ids100507582
Upstream gene distance
Downstream gene distance
SNP risk allelers12489120-C
SNPsrs12489120
Merged0
SNP id current12489120
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta1.3
%95 CiNR
PlatformIllumina [up to 11532644] (imputed)
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003268