Human SNP ID | rs12485321 |
---|---|
Human chromosome | chr3 |
Human SNP position | 108303 |
Pig chromosome | chr13 |
Pig SNP position | 62635284 |
PubMed ID | 22219177 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 3p26.3 x 7q21.3 |
Chromosome id | chr3 x 7 |
Chromosome position | 108303 x 98187015 |
Reported gene | CHL1 x LMTK2 |
Mapped gene | LOC105376920 - LOC101927174 x LMTK2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12485321-? x rs6465657-? |
SNPs | rs12485321 x rs6465657 |
Merged | 0 |
SNP id current | |
Context | intergenic_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.2346 |
%95 Ci | [1.14-1.35] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |