SNP Detail For rs12485321
1.Mapping Information
Human SNP ID rs12485321
Human chromosome chr3
Human SNP position 108303
Pig chromosome chr13
Pig SNP position 62635284
2.Annotation Information
PubMed ID22219177
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/22219177
StudyA genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
Disease/TraitProstate cancer (gene x gene interaction)
Initial sample4,723 European ancestry cases, 4,792 European ancestry controls
Replication sampleNA
Region3p26.3 x 7q21.3
Chromosome idchr3 x 7
Chromosome position108303 x 98187015
Reported geneCHL1 x LMTK2
Mapped geneLOC105376920 - LOC101927174 x LMTK2
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers12485321-? x rs6465657-?
SNPsrs12485321 x rs6465657
Merged0
SNP id current
Contextintergenic_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.2346
%95 Ci[1.14-1.35]
PlatformAffymetrix, Illumina [1117531] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001370