SNP Detail For rs12476289
1.Mapping Information
Human SNP ID rs12476289
Human chromosome chr2
Human SNP position 178777248
Pig chromosome chr15
Pig SNP position 93967669
2.Annotation Information
PubMed ID20031603
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20031603
StudyA genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.
Disease/TraitQT interval
Initial sample2,325 European ancestry individuals
Replication sampleNA
Region2q31.2
Chromosome idchr2
Chromosome position178777248
Reported geneTTN
Mapped geneTTN, LOC101927055
Upstream gene id
Downstream gene id
SNP gene ids7273, 101927055
Upstream gene distance
Downstream gene distance
SNP risk allelers12476289-A
SNPsrs12476289
Merged0
SNP id current12476289
Contextmissense_variant
Intergenic0
Allele frequency0.07
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.29
%95 Ci[0.17-0.41] unit increase
PlatformIllumina [~ 318327]
CNVN
Mapped traitQT interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004682
Study accessionGCST000452