Human SNP ID | rs12474201 |
---|---|
Human chromosome | chr2 |
Human SNP position | 46694146 |
Pig chromosome | chr3 |
Pig SNP position | 99944966 |
PubMed ID | 20881960 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/20881960 |
Study | Hundreds of variants clustered in genomic loci and biological pathways affect human height. |
Disease/Trait | Height |
Initial sample | 133,653 European ancestry individuals |
Replication sample | 50,074 European ancestry individuals |
Region | 2p21 |
Chromosome id | chr2 |
Chromosome position | 46694146 |
Reported gene | SOCS5 |
Mapped gene | LOC105374585 - SOCS5 |
Upstream gene id | 105374585 |
Downstream gene id | 9655 |
SNP gene ids | |
Upstream gene distance | 11217 |
Downstream gene distance | 4814 |
SNP risk allele | rs12474201-A |
SNPs | rs12474201 |
Merged | 0 |
SNP id current | 12474201 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.35 |
P value | 0.0000000000003 |
Pvalue mlog | 12.5228787452803 |
P value text | |
Or beta | 0.028 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix, Illumina [2834208] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000817 |