SNP Detail For rs12474201
1.Mapping Information
Human SNP ID rs12474201
Human chromosome chr2
Human SNP position 46694146
Pig chromosome chr3
Pig SNP position 99944966
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region2p21
Chromosome idchr2
Chromosome position46694146
Reported geneSOCS5
Mapped geneLOC105374585 - SOCS5
Upstream gene id105374585
Downstream gene id9655
SNP gene ids
Upstream gene distance11217
Downstream gene distance4814
SNP risk allelers12474201-A
SNPsrs12474201
Merged0
SNP id current12474201
Contextupstream_gene_variant
Intergenic1
Allele frequency0.35
P value0.0000000000003
Pvalue mlog12.5228787452803
P value text
Or beta0.028
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817