SNP Detail For rs12470837
1.Mapping Information
Human SNP ID rs12470837
Human chromosome chr2
Human SNP position 131824938
Pig chromosome chr1
Pig SNP position 17532598
2.Annotation Information
PubMed ID26545630
JournalNeurobiol Aging
Linkwww.ncbi.nlm.nih.gov/pubmed/26545630
StudyA potential endophenotype for Alzheimer__s disease: cerebrospinal fluid clusterin.
Disease/TraitCerebrospinal fluid clusterin levels
Initial sample300 Alzheimer__s disease cases, 373 controls
Replication sampleNA
Region2q21.2
Chromosome idchr2
Chromosome position131824938
Reported geneLOC647996
Mapped geneC2orf27B - LOC647996
Upstream gene id408029
Downstream gene id647996
SNP gene ids
Upstream gene distance23277
Downstream gene distance2607
SNP risk allelers12470837-?
SNPsrs12470837
Merged
SNP id current12470837
Contextupstream_gene_variant
Intergenic1
Allele frequency
P value0.000001
Pvalue mlog6
P value text
Or beta0.336
%95 Ci[NR] unit decrease
PlatformIllumina [5970354] (imputed)
CNVN
Mapped traitcerebrospinal fluid clusterin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007657
Study accessionGCST003134
PubMed ID26545630
JournalNeurobiol Aging
Linkwww.ncbi.nlm.nih.gov/pubmed/26545630
StudyA potential endophenotype for Alzheimer__s disease: cerebrospinal fluid clusterin.
Disease/TraitCerebrospinal fluid clusterin levels in APOEe4+ carriers
Initial sample177 Alzheimer__s disease cases, 103 controls
Replication sampleNA
Region2q21.2
Chromosome idchr2
Chromosome position131824938
Reported geneLOC647996
Mapped geneC2orf27B - LOC647996
Upstream gene id408029
Downstream gene id647996
SNP gene ids
Upstream gene distance23277
Downstream gene distance2607
SNP risk allelers12470837-?
SNPsrs12470837
Merged
SNP id current12470837
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta0.468
%95 Ci[NR] decrease
PlatformIllumina [5970354] (imputed)
CNVN
Mapped traitAPOE carrier status, cerebrospinal fluid clusterin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007659, http://www.ebi.ac.uk/efo/EFO_0007657
Study accessionGCST003131