Human SNP ID | rs12470837 |
---|---|
Human chromosome | chr2 |
Human SNP position | 131824938 |
Pig chromosome | chr1 |
Pig SNP position | 17532598 |
PubMed ID | 26545630 |
---|---|
Journal | Neurobiol Aging |
Link | www.ncbi.nlm.nih.gov/pubmed/26545630 |
Study | A potential endophenotype for Alzheimer__s disease: cerebrospinal fluid clusterin. |
Disease/Trait | Cerebrospinal fluid clusterin levels |
Initial sample | 300 Alzheimer__s disease cases, 373 controls |
Replication sample | NA |
Region | 2q21.2 |
Chromosome id | chr2 |
Chromosome position | 131824938 |
Reported gene | LOC647996 |
Mapped gene | C2orf27B - LOC647996 |
Upstream gene id | 408029 |
Downstream gene id | 647996 |
SNP gene ids | |
Upstream gene distance | 23277 |
Downstream gene distance | 2607 |
SNP risk allele | rs12470837-? |
SNPs | rs12470837 |
Merged | |
SNP id current | 12470837 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.336 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [5970354] (imputed) |
CNV | N |
Mapped trait | cerebrospinal fluid clusterin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007657 |
Study accession | GCST003134 |
PubMed ID | 26545630 |
Journal | Neurobiol Aging |
Link | www.ncbi.nlm.nih.gov/pubmed/26545630 |
Study | A potential endophenotype for Alzheimer__s disease: cerebrospinal fluid clusterin. |
Disease/Trait | Cerebrospinal fluid clusterin levels in APOEe4+ carriers |
Initial sample | 177 Alzheimer__s disease cases, 103 controls |
Replication sample | NA |
Region | 2q21.2 |
Chromosome id | chr2 |
Chromosome position | 131824938 |
Reported gene | LOC647996 |
Mapped gene | C2orf27B - LOC647996 |
Upstream gene id | 408029 |
Downstream gene id | 647996 |
SNP gene ids | |
Upstream gene distance | 23277 |
Downstream gene distance | 2607 |
SNP risk allele | rs12470837-? |
SNPs | rs12470837 |
Merged | |
SNP id current | 12470837 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.468 |
%95 Ci | [NR] decrease |
Platform | Illumina [5970354] (imputed) |
CNV | N |
Mapped trait | APOE carrier status, cerebrospinal fluid clusterin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007659, http://www.ebi.ac.uk/efo/EFO_0007657 |
Study accession | GCST003131 |