SNP Detail For rs12466022
1.Mapping Information
Human SNP ID rs12466022
Human chromosome chr2
Human SNP position 43131922
Pig chromosome chr3
Pig SNP position 103341892
2.Annotation Information
PubMed ID21833088
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/21833088
StudyGenetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
Disease/TraitMultiple sclerosis
Initial sample9,772 European ancestry cases, 16,849 European ancestry controls
Replication sample4,218 European ancestry cases, 7,296 European ancestry controls
Region2p21
Chromosome idchr2
Chromosome position43131922
Reported geneintergenic
Mapped geneLOC100506047, LOC105374570
Upstream gene id
Downstream gene id
SNP gene ids100506047, 105374570
Upstream gene distance
Downstream gene distance
SNP risk allelers12466022-C
SNPsrs12466022
Merged0
SNP id current12466022
Contextregulatory_region_variant
Intergenic0
Allele frequencyNR
P value0.0000000006
Pvalue mlog9.22184874961635
P value text
Or beta1.11
%95 Ci[1.1-1.13]
PlatformIllumina [465434]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST001198