Human SNP ID | rs1245582 |
---|---|
Human chromosome | chr10 |
Human SNP position | 72018509 |
Pig chromosome | chr14 |
Pig SNP position | 80784887 |
PubMed ID | 24216480 |
---|---|
Journal | J Clin Invest |
Link | www.ncbi.nlm.nih.gov/pubmed/24216480 |
Study | Lumbar disc degeneration is linked to a carbohydrate sulfotransferase 3 variant. |
Disease/Trait | Disc degeneration (lumbar) |
Initial sample | 366 Japanese ancestry cases, 3,331 Japanese ancestry controls |
Replication sample | 1,628 East Asian ancestry cases, 17,469 East Asian ancestry controls, 399 European ancestry cases, 5,035 European ancestry control |
Region | 10q22.1 |
Chromosome id | chr10 |
Chromosome position | 72018509 |
Reported gene | CHST3 |
Mapped gene | CHST3 - SPOCK2 |
Upstream gene id | 9469 |
Downstream gene id | 9806 |
SNP gene ids | |
Upstream gene distance | 4945 |
Downstream gene distance | 40525 |
SNP risk allele | rs1245582-? |
SNPs | rs1245582 |
Merged | 0 |
SNP id current | 1245582 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.44 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (East Asians) |
Or beta | |
%95 Ci | |
Platform | Illumina [464775] |
CNV | N |
Mapped trait | lumbar disc degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004994 |
Study accession | GCST002225 |
PubMed ID | 24216480 |
Journal | J Clin Invest |
Link | www.ncbi.nlm.nih.gov/pubmed/24216480 |
Study | Lumbar disc degeneration is linked to a carbohydrate sulfotransferase 3 variant. |
Disease/Trait | Disc degeneration (lumbar) |
Initial sample | 366 Japanese ancestry cases, 3,331 Japanese ancestry controls |
Replication sample | 1,628 East Asian ancestry cases, 17,469 East Asian ancestry controls, 399 European ancestry cases, 5,035 European ancestry control |
Region | 10q22.1 |
Chromosome id | chr10 |
Chromosome position | 72018509 |
Reported gene | CHST3 |
Mapped gene | CHST3 - SPOCK2 |
Upstream gene id | 9469 |
Downstream gene id | 9806 |
SNP gene ids | |
Upstream gene distance | 4945 |
Downstream gene distance | 40525 |
SNP risk allele | rs1245582-? |
SNPs | rs1245582 |
Merged | 0 |
SNP id current | 1245582 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.44 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.13-1.29] |
Platform | Illumina [464775] |
CNV | N |
Mapped trait | lumbar disc degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004994 |
Study accession | GCST002225 |