Human SNP ID | rs12451840 |
---|---|
Human chromosome | chr17 |
Human SNP position | 73811574 |
Pig chromosome | chr12 |
Pig SNP position | 7269773 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 17q25.1 |
Chromosome id | chr17 |
Chromosome position | 73811574 |
Reported gene | NR |
Mapped gene | LINC00469 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 283982 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12451840-C |
SNPs | rs12451840 |
Merged | 0 |
SNP id current | 12451840 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.0417941590759076 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (IGP23) |
Or beta | 0.7321 |
%95 Ci | [0.42-1.04] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |