Human SNP ID | rs12449465 |
---|---|
Human chromosome | chr17 |
Human SNP position | 3126260 |
Pig chromosome | chr12 |
Pig SNP position | 50917094 |
PubMed ID | 23472165 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23472165 |
Study | Genome-wide association study link novel loci to endometriosis. |
Disease/Trait | Endometriosis |
Initial sample | 1,514 European ancestry casses, 12,660 European ancestry controls |
Replication sample | 505 European ancestry cases, 1,811 European ancestry controls |
Region | 17p13.3 |
Chromosome id | chr17 |
Chromosome position | 3126260 |
Reported gene | OR1D2, OR1G1 |
Mapped gene | OR1D2 - OR1G1 |
Upstream gene id | 4991 |
Downstream gene id | 8390 |
SNP gene ids | |
Upstream gene distance | 33264 |
Downstream gene distance | 245 |
SNP risk allele | rs12449465-G |
SNPs | rs12449465 |
Merged | 0 |
SNP id current | 12449465 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.125 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.26 |
%95 Ci | [NR] |
Platform | Illumina [580699] |
CNV | N |
Mapped trait | endometriosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001065 |
Study accession | GCST001894 |