SNP Detail For rs12449465
1.Mapping Information
Human SNP ID rs12449465
Human chromosome chr17
Human SNP position 3126260
Pig chromosome chr12
Pig SNP position 50917094
2.Annotation Information
PubMed ID23472165
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23472165
StudyGenome-wide association study link novel loci to endometriosis.
Disease/TraitEndometriosis
Initial sample1,514 European ancestry casses, 12,660 European ancestry controls
Replication sample505 European ancestry cases, 1,811 European ancestry controls
Region17p13.3
Chromosome idchr17
Chromosome position3126260
Reported geneOR1D2, OR1G1
Mapped geneOR1D2 - OR1G1
Upstream gene id4991
Downstream gene id8390
SNP gene ids
Upstream gene distance33264
Downstream gene distance245
SNP risk allelers12449465-G
SNPsrs12449465
Merged0
SNP id current12449465
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.125
P value0.000001
Pvalue mlog6
P value text
Or beta1.26
%95 Ci[NR]
PlatformIllumina [580699]
CNVN
Mapped traitendometriosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001065
Study accessionGCST001894