SNP Detail For rs12446940
1.Mapping Information
Human SNP ID rs12446940
Human chromosome chr16
Human SNP position 3912619
Pig chromosome chr3
Pig SNP position 39440468
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitNeurofibrillary tangles
Initial sampleup to 4,707 individuals
Replication sampleNA
Region16p13.3
Chromosome idchr16
Chromosome position3912619
Reported geneintergenic
Mapped geneCREBBP - LOC102724927
Upstream gene id1387
Downstream gene id102724927
SNP gene ids
Upstream gene distance32499
Downstream gene distance34990
SNP risk allelers12446940-A
SNPsrs12446940
Merged0
SNP id current12446940
Contextintergenic_variant
Intergenic1
Allele frequency0.3563
P value0.000004
Pvalue mlog5.39794000867203
P value text(Ordinal I)
Or beta0.1929
%95 Ci[0.11-0.27] unit increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitneurofibrilliary tangles measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006797
Study accessionGCST002594