SNP Detail For rs12446301
1.Mapping Information
Human SNP ID rs12446301
Human chromosome chr16
Human SNP position 82664056
Pig chromosome chr6
Pig SNP position 6322132
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region16q23.3
Chromosome idchr16
Chromosome position82664056
Reported geneNR
Mapped geneCDH13
Upstream gene id
Downstream gene id
SNP gene ids1012
Upstream gene distance
Downstream gene distance
SNP risk allelers12446301-T
SNPsrs12446301
Merged0
SNP id current12446301
Contextintron_variant
Intergenic0
Allele frequency0.1567
P value0.0000002
Pvalue mlog6.69897000433601
P value text(Trans/trans-18:2, EA)
Or beta0.0021
%95 Ci[0.0013-0.0029] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans fatty acid measurement, trans/trans-18:2 fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006826
Study accessionGCST002721