SNP Detail For rs12446289
1.Mapping Information
Human SNP ID rs12446289
Human chromosome chr16
Human SNP position 7853607
Pig chromosome chr3
Pig SNP position 35715848
2.Annotation Information
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (MHPG)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
Region16p13.2
Chromosome idchr16
Chromosome position7853607
Reported geneintergenic
Mapped geneRBFOX1 - LOC105371069
Upstream gene id54715
Downstream gene id105371069
SNP gene ids
Upstream gene distance140267
Downstream gene distance1518
SNP risk allelers12446289-C
SNPsrs12446289
Merged0
SNP id current12446289
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.2893
%95 Ciunit increase
PlatformIllumina [5767231] (imputed)
CNVN
Mapped traitMHPG measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005133
Study accessionGCST001822