Human SNP ID | rs12435940 |
---|---|
Human chromosome | chr14 |
Human SNP position | 25552779 |
Pig chromosome | chr7 |
Pig SNP position | 78947487 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 14q12 |
Chromosome id | chr14 |
Chromosome position | 25552779 |
Reported gene | STXBP6, NOVA1 |
Mapped gene | HMGN2P6 - LOC105370416 |
Upstream gene id | 643872 |
Downstream gene id | 105370416 |
SNP gene ids | |
Upstream gene distance | 285333 |
Downstream gene distance | 275002 |
SNP risk allele | rs12435940-A |
SNPs | rs12435940 |
Merged | |
SNP id current | 12435940 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.96 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 0.485 |
%95 Ci | [0.3-0.67] unit decrease |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |