SNP Detail For rs12430077
1.Mapping Information
Human SNP ID rs12430077
Human chromosome chr13
Human SNP position 52035072
Pig chromosome chr11
Pig SNP position 16186727
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitAntibody status in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region13q14.3
Chromosome idchr13
Chromosome position52035072
Reported geneNR
Mapped geneUTP14C - NEK5
Upstream gene id9724
Downstream gene id341676
SNP gene ids
Upstream gene distance1472
Downstream gene distance1339
SNP risk allelers12430077-?
SNPsrs12430077
Merged0
SNP id current12430077
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitantibody measurement, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004556, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002280