Human SNP ID | rs12430077 |
---|---|
Human chromosome | chr13 |
Human SNP position | 52035072 |
Pig chromosome | chr11 |
Pig SNP position | 16186727 |
PubMed ID | 24324551 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24324551 |
Study | Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. |
Disease/Trait | Antibody status in Tripanosoma cruzi seropositivity |
Initial sample | 580 Brazilian ancestry individuals |
Replication sample | NA |
Region | 13q14.3 |
Chromosome id | chr13 |
Chromosome position | 52035072 |
Reported gene | NR |
Mapped gene | UTP14C - NEK5 |
Upstream gene id | 9724 |
Downstream gene id | 341676 |
SNP gene ids | |
Upstream gene distance | 1472 |
Downstream gene distance | 1339 |
SNP risk allele | rs12430077-? |
SNPs | rs12430077 |
Merged | 0 |
SNP id current | 12430077 |
Context | non_coding_transcript_exon_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [5486770] (imputed) |
CNV | N |
Mapped trait | antibody measurement, Trypanosoma cruzi seropositivity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004556, http://www.ebi.ac.uk/efo/EFO_0005530 |
Study accession | GCST002280 |