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SNP Detail For rs12429545
1.Mapping Information
| Human SNP ID | rs12429545 |
|---|---|
| Human chromosome | chr13 |
| Human SNP position | 53528071 |
| Pig chromosome | chr11 |
| Pig SNP position | 27846692 |
2.Annotation Information
| PubMed ID | 25953783 |
|---|---|
| Journal | Int J Epidemiol |
| Link | www.ncbi.nlm.nih.gov/pubmed/25953783 |
| Study | A genome-wide association study of body mass index across early life and childhood. |
| Disease/Trait | Body mass index |
| Initial sample | 9,377 children and adolescents |
| Replication sample | 3,918 European ancestry children and adolescents |
| Region | 13q14.3 |
| Chromosome id | chr13 |
| Chromosome position | 53528071 |
| Reported gene | OLFM4 |
| Mapped gene | LINC01065 - LOC105370210 |
| Upstream gene id | 102723875 |
| Downstream gene id | 105370210 |
| SNP gene ids | |
| Upstream gene distance | 376171 |
| Downstream gene distance | 27889 |
| SNP risk allele | rs12429545-A |
| SNPs | rs12429545 |
| Merged | 0 |
| SNP id current | 12429545 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.128 |
| P value | 0.00000001 |
| Pvalue mlog | 8 |
| P value text | (age 8) |
| Or beta | 0.018 |
| %95 Ci | [0.012-0.024] unit increase |
| Platform | Illumina [~ 2200000] (imputed) |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002894 |
| PubMed ID | 25953783 |
| Journal | Int J Epidemiol |
| Link | www.ncbi.nlm.nih.gov/pubmed/25953783 |
| Study | A genome-wide association study of body mass index across early life and childhood. |
| Disease/Trait | Body mass index |
| Initial sample | 9,377 children and adolescents |
| Replication sample | 3,918 European ancestry children and adolescents |
| Region | 13q14.3 |
| Chromosome id | chr13 |
| Chromosome position | 53528071 |
| Reported gene | OLFM4 |
| Mapped gene | LINC01065 - LOC105370210 |
| Upstream gene id | 102723875 |
| Downstream gene id | 105370210 |
| SNP gene ids | |
| Upstream gene distance | 376171 |
| Downstream gene distance | 27889 |
| SNP risk allele | rs12429545-A |
| SNPs | rs12429545 |
| Merged | 0 |
| SNP id current | 12429545 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.128 |
| P value | 0.000000006 |
| Pvalue mlog | 8.22184874961635 |
| P value text | (age 1-17) |
| Or beta | |
| %95 Ci | |
| Platform | Illumina [~ 2200000] (imputed) |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002894 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 13q14.3 |
| Chromosome id | chr13 |
| Chromosome position | 53528071 |
| Reported gene | OLFM4 |
| Mapped gene | LINC01065 - LOC105370210 |
| Upstream gene id | 102723875 |
| Downstream gene id | 105370210 |
| SNP gene ids | |
| Upstream gene distance | 376171 |
| Downstream gene distance | 27889 |
| SNP risk allele | rs12429545-A |
| SNPs | rs12429545 |
| Merged | 0 |
| SNP id current | 12429545 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.133 |
| P value | 0.00000002 |
| Pvalue mlog | 7.69897000433601 |
| P value text | (EA, men) |
| Or beta | 0.035 |
| %95 Ci | [0.023-0.047] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 13q14.3 |
| Chromosome id | chr13 |
| Chromosome position | 53528071 |
| Reported gene | OLFM4 |
| Mapped gene | LINC01065 - LOC105370210 |
| Upstream gene id | 102723875 |
| Downstream gene id | 105370210 |
| SNP gene ids | |
| Upstream gene distance | 376171 |
| Downstream gene distance | 27889 |
| SNP risk allele | rs12429545-A |
| SNPs | rs12429545 |
| Merged | 0 |
| SNP id current | 12429545 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.134 |
| P value | 0.00000009 |
| Pvalue mlog | 7.04575749056067 |
| P value text | (EA, women) |
| Or beta | 0.032 |
| %95 Ci | [0.02-0.044] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 13q14.3 |
| Chromosome id | chr13 |
| Chromosome position | 53528071 |
| Reported gene | OLFM4 |
| Mapped gene | LINC01065 - LOC105370210 |
| Upstream gene id | 102723875 |
| Downstream gene id | 105370210 |
| SNP gene ids | |
| Upstream gene distance | 376171 |
| Downstream gene distance | 27889 |
| SNP risk allele | rs12429545-A |
| SNPs | rs12429545 |
| Merged | 0 |
| SNP id current | 12429545 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.133 |
| P value | 0.000000000001 |
| Pvalue mlog | 12 |
| P value text | (EA) |
| Or beta | 0.033 |
| %95 Ci | [0.024-0.043] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 13q14.3 |
| Chromosome id | chr13 |
| Chromosome position | 53528071 |
| Reported gene | OLFM4 |
| Mapped gene | LINC01065 - LOC105370210 |
| Upstream gene id | 102723875 |
| Downstream gene id | 105370210 |
| SNP gene ids | |
| Upstream gene distance | 376171 |
| Downstream gene distance | 27889 |
| SNP risk allele | rs12429545-A |
| SNPs | rs12429545 |
| Merged | 0 |
| SNP id current | 12429545 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.135 |
| P value | 0.0000000000003 |
| Pvalue mlog | 12.5228787452803 |
| P value text | |
| Or beta | 0.032 |
| %95 Ci | [0.024-0.041] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 26604143 |
| Journal | Hum Mol Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/26604143 |
| Study | Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index. |
| Disease/Trait | Childhood body mass index |
| Initial sample | 34,744 European ancestry children |
| Replication sample | 11,313 European ancestry children |
| Region | 13q14.3 |
| Chromosome id | chr13 |
| Chromosome position | 53528071 |
| Reported gene | OLFM4 |
| Mapped gene | LINC01065 - LOC105370210 |
| Upstream gene id | 102723875 |
| Downstream gene id | 105370210 |
| SNP gene ids | |
| Upstream gene distance | 376171 |
| Downstream gene distance | 27889 |
| SNP risk allele | rs12429545-A |
| SNPs | rs12429545 |
| Merged | 0 |
| SNP id current | 12429545 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.13 |
| P value | 0.00000000000002 |
| Pvalue mlog | 13.698970004336 |
| P value text | |
| Or beta | 0.076 |
| %95 Ci | [0.056-0.096] unit increase |
| Platform | Affymetrix, Illumina [2499691] (imputed) |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST003177 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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