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SNP Detail For rs12425791
1.Mapping Information
| Human SNP ID | rs12425791 |
|---|---|
| Human chromosome | chr12 |
| Human SNP position | 674318 |
| Pig chromosome | chr5 |
| Pig SNP position | 70200050 |
2.Annotation Information
| PubMed ID | 19369658 |
|---|---|
| Journal | N Engl J Med |
| Link | www.ncbi.nlm.nih.gov/pubmed/19369658 |
| Study | Genomewide association studies of stroke. |
| Disease/Trait | Stroke |
| Initial sample | 1,164 European ancestry ischemic cases, 380 European ancestry cases, 18,058 European ancestry controls |
| Replication sample | 259 African American ancestry ischemic cases, 41 African American ancestry cases, 2,704 African American ancestry controls, 652 European ancestry ischemic cases, 3,613 European ancestry controls |
| Region | 12p13.33 |
| Chromosome id | chr12 |
| Chromosome position | 674318 |
| Reported gene | NINJ2, WNK1 |
| Mapped gene | NINJ2 - LOC105369597 |
| Upstream gene id | 4815 |
| Downstream gene id | 105369597 |
| SNP gene ids | |
| Upstream gene distance | 10577 |
| Downstream gene distance | 7424 |
| SNP risk allele | rs12425791-A |
| SNPs | rs12425791 |
| Merged | 0 |
| SNP id current | 12425791 |
| Context | downstream_gene_variant |
| Intergenic | 1 |
| Allele frequency | 0.23 |
| P value | 0.000000001 |
| Pvalue mlog | 9 |
| P value text | (EA) |
| Or beta | 1.27 |
| %95 Ci | [NR] |
| Platform | Affymetrix, Illumina [2194468] (imputed) |
| CNV | N |
| Mapped trait | stroke |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000712 |
| Study accession | GCST000379 |
| PubMed ID | 19369658 |
| Journal | N Engl J Med |
| Link | www.ncbi.nlm.nih.gov/pubmed/19369658 |
| Study | Genomewide association studies of stroke. |
| Disease/Trait | Stroke |
| Initial sample | 1,164 European ancestry ischemic cases, 380 European ancestry cases, 18,058 European ancestry controls |
| Replication sample | 259 African American ancestry ischemic cases, 41 African American ancestry cases, 2,704 African American ancestry controls, 652 European ancestry ischemic cases, 3,613 European ancestry controls |
| Region | 12p13.33 |
| Chromosome id | chr12 |
| Chromosome position | 674318 |
| Reported gene | NINJ2, WNK1 |
| Mapped gene | NINJ2 - LOC105369597 |
| Upstream gene id | 4815 |
| Downstream gene id | 105369597 |
| SNP gene ids | |
| Upstream gene distance | 10577 |
| Downstream gene distance | 7424 |
| SNP risk allele | rs12425791-A |
| SNPs | rs12425791 |
| Merged | 0 |
| SNP id current | 12425791 |
| Context | downstream_gene_variant |
| Intergenic | 1 |
| Allele frequency | 0.23 |
| P value | 0.000000002 |
| Pvalue mlog | 8.69897000433601 |
| P value text | (ischemic stroke, EA) |
| Or beta | 1.29 |
| %95 Ci | [NR] |
| Platform | Affymetrix, Illumina [2194468] (imputed) |
| CNV | N |
| Mapped trait | stroke |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000712 |
| Study accession | GCST000379 |
| PubMed ID | 19369658 |
| Journal | N Engl J Med |
| Link | www.ncbi.nlm.nih.gov/pubmed/19369658 |
| Study | Genomewide association studies of stroke. |
| Disease/Trait | Stroke |
| Initial sample | 1,164 European ancestry ischemic cases, 380 European ancestry cases, 18,058 European ancestry controls |
| Replication sample | 259 African American ancestry ischemic cases, 41 African American ancestry cases, 2,704 African American ancestry controls, 652 European ancestry ischemic cases, 3,613 European ancestry controls |
| Region | 12p13.33 |
| Chromosome id | chr12 |
| Chromosome position | 674318 |
| Reported gene | NINJ2, WNK1 |
| Mapped gene | NINJ2 - LOC105369597 |
| Upstream gene id | 4815 |
| Downstream gene id | 105369597 |
| SNP gene ids | |
| Upstream gene distance | 10577 |
| Downstream gene distance | 7424 |
| SNP risk allele | rs12425791-A |
| SNPs | rs12425791 |
| Merged | 0 |
| SNP id current | 12425791 |
| Context | downstream_gene_variant |
| Intergenic | 1 |
| Allele frequency | 0.23 |
| P value | 0.0000000008 |
| Pvalue mlog | 9.09691001300805 |
| P value text | |
| Or beta | 1.26 |
| %95 Ci | [NR] |
| Platform | Affymetrix, Illumina [2194468] (imputed) |
| CNV | N |
| Mapped trait | stroke |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000712 |
| Study accession | GCST000379 |
| PubMed ID | 19369658 |
| Journal | N Engl J Med |
| Link | www.ncbi.nlm.nih.gov/pubmed/19369658 |
| Study | Genomewide association studies of stroke. |
| Disease/Trait | Stroke |
| Initial sample | 1,164 European ancestry ischemic cases, 380 European ancestry cases, 18,058 European ancestry controls |
| Replication sample | 259 African American ancestry ischemic cases, 41 African American ancestry cases, 2,704 African American ancestry controls, 652 European ancestry ischemic cases, 3,613 European ancestry controls |
| Region | 12p13.33 |
| Chromosome id | chr12 |
| Chromosome position | 674318 |
| Reported gene | NINJ2, WNK1 |
| Mapped gene | NINJ2 - LOC105369597 |
| Upstream gene id | 4815 |
| Downstream gene id | 105369597 |
| SNP gene ids | |
| Upstream gene distance | 10577 |
| Downstream gene distance | 7424 |
| SNP risk allele | rs12425791-A |
| SNPs | rs12425791 |
| Merged | 0 |
| SNP id current | 12425791 |
| Context | downstream_gene_variant |
| Intergenic | 1 |
| Allele frequency | 0.23 |
| P value | 0.000000001 |
| Pvalue mlog | 9 |
| P value text | (ischemic stroke) |
| Or beta | 1.29 |
| %95 Ci | [NR] |
| Platform | Affymetrix, Illumina [2194468] (imputed) |
| CNV | N |
| Mapped trait | stroke |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000712 |
| Study accession | GCST000379 |
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