Human SNP ID | rs12422552 |
---|---|
Human chromosome | chr12 |
Human SNP position | 14260997 |
Pig chromosome | chr5 |
Pig SNP position | 61751167 |
PubMed ID | 23535729 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535729 |
Study | Large-scale genotyping identifies 41 new loci associated with breast cancer risk. |
Disease/Trait | Breast cancer |
Initial sample | 10,052 European ancestry cases, 12,575 European ancestry controls |
Replication sample | 45,290 European ancestry cases, 41,880 European ancestry controls |
Region | 12p13.1 |
Chromosome id | chr12 |
Chromosome position | 14260997 |
Reported gene | intergenic |
Mapped gene | GRIN2B - ATF7IP |
Upstream gene id | 2904 |
Downstream gene id | 55729 |
SNP gene ids | |
Upstream gene distance | 278995 |
Downstream gene distance | 104635 |
SNP risk allele | rs12422552-C |
SNPs | rs12422552 |
Merged | 0 |
SNP id current | 12422552 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.26 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 1.05 |
%95 Ci | [1.03-1.07] |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001937 |