SNP Detail For rs12422552
1.Mapping Information
Human SNP ID rs12422552
Human chromosome chr12
Human SNP position 14260997
Pig chromosome chr5
Pig SNP position 61751167
2.Annotation Information
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region12p13.1
Chromosome idchr12
Chromosome position14260997
Reported geneintergenic
Mapped geneGRIN2B - ATF7IP
Upstream gene id2904
Downstream gene id55729
SNP gene ids
Upstream gene distance278995
Downstream gene distance104635
SNP risk allelers12422552-C
SNPsrs12422552
Merged0
SNP id current12422552
Contextregulatory_region_variant
Intergenic1
Allele frequency0.26
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.05
%95 Ci[1.03-1.07]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937