Human SNP ID | rs12418451 |
---|---|
Human chromosome | chr11 |
Human SNP position | 69167951 |
Pig chromosome | chr2 |
Pig SNP position | 2544520 |
PubMed ID | 22219177 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 14q11.2 x 11q13.3 |
Chromosome id | chr14 x 11 |
Chromosome position | 20556460 x 69167951 |
Reported gene | RNASE9 x MYEOV |
Mapped gene | RNASE9 x LOC338694, LOC105369366 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1243647-? x rs12418451-? |
SNPs | rs1243647 x rs12418451 |
Merged | |
SNP id current | |
Context | missense_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.3333 |
%95 Ci | [1.19-1.49] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |
PubMed ID | 22219177 |
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 15q21.1 x 11q13.3 |
Chromosome id | chr15 x 11 |
Chromosome position | 48747600 x 69167951 |
Reported gene | CEP152 x MYEOV |
Mapped gene | CEP152 x LOC338694, LOC105369366 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs784411-? x rs12418451-? |
SNPs | rs784411 x rs12418451 |
Merged | |
SNP id current | |
Context | intron_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.42 |
%95 Ci | [1.25-1.61] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |
PubMed ID | 22219177 |
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 3p14.3 x 11q13.3 |
Chromosome id | chr3 x 11 |
Chromosome position | 57409039 x 69167951 |
Reported gene | DNAH12 x MYEOV |
Mapped gene | DNAH12 x LOC338694, LOC105369366 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1916284-? x rs12418451-? |
SNPs | rs1916284 x rs12418451 |
Merged | |
SNP id current | |
Context | intron_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.2658 |
%95 Ci | [1.15-1.41] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |