Human SNP ID | rs12409639 |
---|---|
Human chromosome | chr1 |
Human SNP position | 205669094 |
Pig chromosome | chr9 |
Pig SNP position | 72619856 |
PubMed ID | 23269536 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23269536 |
Study | Genome-wide association study identified novel genetic variant on SLC45A3 gene associated with serum levels prostate-specific antigen (PSA) in a Chinese population. |
Disease/Trait | Prostate-specific antigen levels |
Initial sample | 1,999 Chinese ancestry males |
Replication sample | 1,496 Chinese ancestry males |
Region | 1q32.1 |
Chromosome id | chr1 |
Chromosome position | 205669094 |
Reported gene | SLC45A3, NUCKS1, RAB7L1, SLC41A1, FLJ32569 |
Mapped gene | SLC45A3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 85414 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs12409639-A |
SNPs | rs12409639 |
Merged | 0 |
SNP id current | 12409639 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.11 |
P value | 2E-19 |
Pvalue mlog | 18.698970004336 |
P value text | |
Or beta | 0.2 |
%95 Ci | [NR] % increase |
Platform | Illumina [> 709211] (imputed) |
CNV | N |
Mapped trait | prostate specific antigen measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004624 |
Study accession | GCST001796 |