SNP Detail For rs12409639
1.Mapping Information
Human SNP ID rs12409639
Human chromosome chr1
Human SNP position 205669094
Pig chromosome chr9
Pig SNP position 72619856
2.Annotation Information
PubMed ID23269536
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23269536
StudyGenome-wide association study identified novel genetic variant on SLC45A3 gene associated with serum levels prostate-specific antigen (PSA) in a Chinese population.
Disease/TraitProstate-specific antigen levels
Initial sample1,999 Chinese ancestry males
Replication sample1,496 Chinese ancestry males
Region1q32.1
Chromosome idchr1
Chromosome position205669094
Reported geneSLC45A3, NUCKS1, RAB7L1, SLC41A1, FLJ32569
Mapped geneSLC45A3
Upstream gene id
Downstream gene id
SNP gene ids85414
Upstream gene distance
Downstream gene distance
SNP risk allelers12409639-A
SNPsrs12409639
Merged0
SNP id current12409639
Contextintron_variant
Intergenic0
Allele frequency0.11
P value2E-19
Pvalue mlog18.698970004336
P value text
Or beta0.2
%95 Ci[NR] % increase
PlatformIllumina [> 709211] (imputed)
CNVN
Mapped traitprostate specific antigen measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004624
Study accessionGCST001796